Index

A

A (tomography.defaults.ReconstructionConfig attribute)

angles_names (tomography.defaults.ReconstructionConfig attribute) angles_values (tomography.defaults.ReconstructionConfig attribute)

B

bool_from_interval() (in module tomography.crossvalidation)

build_Design_Matrix() (in module tomography.core)

C

calculate_projection() (in module tomography.core) change_par() (tomography.optimization.ReconstructorCVXPY method) colorize() (in module tomography.utils)

connect_data() (tomography.Tomographer method) corr_objective() (in module tomography.crossvalidation) create_connectivity() (in module tomography.core) cross_validate() (in module tomography.crossvalidation)

D

distance_point_line() (in module tomography.core)

E

equilibrate() (in module tomography.gridsearch)

F

find_extremities() (in module tomography.core) first_points (tomography.defaults.ReconstructionConfig attribute)

fit() (tomography.optimization.ReconstructorCVXPY method) fit_heteroscedastic() (in module tomography.gaussprocess) fit_predict() (tomography.optimization.ReconstructorCVXPY method)

G

get_plate() (in module tomography.utils)

get_x() (in module tomography.utils) gridsearch_allignment() (in module tomography.gridsearch)

I

IPT_2d() (in module tomography.utils)

IPT_angular() (in module tomography.utils) IPT_junker() (in module tomography.utils)

L

linear_kernel() (in module tomography.core)

load_cfg() (tomography.Tomographer method)

M

mask_g (tomography.defaults.ReconstructionConfig attribute) mask_thrs (tomography.defaults.ReconstructionConfig attribute) masked_formulation (tomography.defaults.ReconstructionConfig attribute) mixed_interpolator() (in module tomography.gridsearch) mixed_interpolator2() (in module tomography.utils) module tomography.core tomography.crossvalidation tomography.defaults tomography.gaussprocess tomography.gridsearch tomography.optimization tomography.utils tomography.visualize

N

nb_loglik() (in module tomography.crossvalidation)

normalization_factors() (in module tomography.gaussprocess) normalize_AUC() (in module tomography.utils)

O

objective_afterscaling() (in module tomography.gridsearch)

optimize() (tomography.optimization.ReconstructorCVXPY method)

P

place_inside_mask() (in module tomography.core) plot_plate_adjustment() (in module tomography.visualize) plot_raw_data_sum() (in module tomography.visualize) plot_spikes_adjustment() (in module tomography.visualize) poisson_log_lik_objective() (in module tomography.crossvalidation) predict_gp_heteroscedastic() (in module tomography.gaussprocess) prepare_design_masked() (in module tomography.core)

prepare_design_symmetry() (in module tomography.core) prepare_design_symmetry_masked() (in module tomography.core) prepare_observations() (in module tomography.core) prepare_observations_symmetry() (in module tomography.core) prepare_regression() (in module tomography.core) prepare_regression_symmetry() (in module tomography.core) prepare_regression_symmetry_masked() (in module tomography.core) proj_len (tomography.defaults.ReconstructionConfig attribute)

R

reconstruct() (tomography.Tomographer method) ReconstructionConfig (class in tomography.defaults) ReconstructorCVXPY (class in tomography.optimization)

ReconstructorFastTest (class in tomography.optimization) reference_mask (tomography.defaults.ReconstructionConfig attribute) rmse_objective() (in module tomography.crossvalidation) rss_objective() (in module tomography.crossvalidation)

S

slicing_parameters() (in module tomography.core) split_list() (in module tomography.crossvalidation)

sum_nb_ll() (in module tomography.optimization) sum_project() (in module tomography.core) symmetry (tomography.defaults.ReconstructionConfig attribute)

T

to_file() (tomography.defaults.ReconstructionConfig method) Tomographer (class in tomography) tomography.core module tomography.crossvalidation module tomography.defaults module tomography.gaussprocess module

tomography.gridsearch module tomography.optimization module tomography.utils module tomography.visualize module

U

use_gp_to_adjust_plates_diff() (in module tomography.gaussprocess)

use_gp_to_adjust_spikes_diff() (in module tomography.gaussprocess)

W

widths (tomography.defaults.ReconstructionConfig attribute)

Z

zero_shifting() (in module tomography.gridsearch)